Run FLARE for a single forecast

Run FLARE for a single forecast

Usage

run_flare(
  lake_directory,
  configure_run_file,
  config_set_name,
  clean_start = FALSE
)

Arguments

lake_directory

full path to repository directory

configure_run_file

flare configuration object

config_set_name

directory within configuration/workflow with run configuration files

clean_start

logical: TRUE = reset run configuration with the file in the configuration directory within repository

Value

the full path to save netcdf file that is used to restart following forecast

Details

Combines functions necessary to do a complete execution of FLARE

Examples

if (FALSE) { # interactive()
#Load and install dependencies
library(dplyr)
library(ggplot2)
library(readr)
library(lubridate)
remotes::install_github("rqthomas/GLM3r")
Sys.setenv('GLM_PATH'='GLM3r')

dir <- normalizePath(tempdir(),  winslash = "/")
lake_directory <- file.path(dir, "extdata")
#Copy files to temporarly directory
dir.create(dir,showWarnings = FALSE)
file.copy(system.file("extdata", package = "FLAREr"),
          tempdir(),
          recursive = TRUE)
run_flare(lake_directory = lake_directory,
          configure_run_file = "configure_run.yml",
          config_set_name = "default")
open_dataset(file.path(lake_directory,"forecasts/parquet")) |>
  filter(variable == "temperature",
        depth == 1) |>
 collect() |>
 ggplot(aes(x = datetime, y = prediction, group = parameter)) +
 geom_line() +
 geom_vline(aes(xintercept = as_datetime(reference_datetime))) +
 labs(title = "1 m water temperature forecast")

}